Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10203530 chr2:107235579 G/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs10204305 chr2:24303173 C/T 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs10205979 chr2:24335790 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10207813 chr2:24335111 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10208832 chr2:24292870 G/A 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs1020976 chr10:26935049 G/C 0.000146 178 26.27 22.63 24.53 KM Plot
PCPG rs10216523 chr8:126190394 T/A 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs10222564 chr3:122266336 T/C 6.51E-11 176 24.85 28.93 5.8 KM Plot
PCPG rs1023152 chr21:38442706 C/A 8.28E-9 177 25 25.87 3.83 KM Plot
PCPG rs10266519 chr7:1142977 C/T 0.000362 172 25.92 24.95 49.58 KM Plot
PCPG rs10272518 chr7:33687493 G/A 1.28E-7 175 19.87 20.37 25.67 KM Plot
PCPG rs10279301 chr7:156261315 C/T 3.79E-5 175 25.7 19.42 2.93 KM Plot
PCPG rs1028089 chr3:80416552 A/G 6.39E-7 170 25.6 26.57 19.87 KM Plot
PCPG rs1035249 chr2:172139165 A/C 1.18E-7 178 24.93 30.93 19.87 KM Plot
PCPG rs10400727 chr14:74471392 T/C 1.85E-6 174 25.28 30.93 4.5 KM Plot